Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs7697004 | chr4:10028077 | G/A | 5.97E-5 | 182 | 13.1 | 13.58 | 8.1 | KM Plot |
| ESCA | rs7697416 | chr4:10028287 | G/A | 4.7E-5 | 183 | 13.1 | 13.6 | 8.1 | KM Plot |
| ESCA | rs77009274 | chr15:65592809 | G/A | 6.14E-5 | 182 | 12.87 | 16.53 | 4.08 | KM Plot |
| ESCA | rs77319655 | chr1:247196995 | A/G | 6.58E-7 | 180 | 13.22 | 17.23 | 3.87 | KM Plot |
| ESCA | rs7739735 | chr6:146123536 | G/A | 2.64E-5 | 184 | 13.57 | 13.5 | 9.77 | KM Plot |
| ESCA | rs7744014 | chr6:146123818 | G/A | 2.64E-5 | 184 | 13.57 | 13.5 | 9.77 | KM Plot |
| ESCA | rs7753833 | chr6:146161432 | C/A | 3.31E-5 | 180 | 13.67 | 13.03 | 10.22 | KM Plot |
| ESCA | rs77610872 | chr19:5059522 | C/T | 3.12E-6 | 182 | 13.1 | 14.82 | 2.93 | KM Plot |
| ESCA | rs7778087 | chr7:111233157 | T/C | 0 | 183 | 13.35 | 14.5 | 0.8 | KM Plot |
| ESCA | rs77866843 | chr12:123837291 | C/A | 6.07E-7 | 182 | 13.1 | 15.57 | 2.7 | KM Plot |
| ESCA | rs77972667 | chr6:170130456 | G/C | 4.95E-8 | 182 | 12.97 | 21.3 | 1.57 | KM Plot |
| ESCA | rs78020509 | chr11:118384811 | A/G | 4.58E-10 | 181 | 13.37 | 15.57 | 1.4 | KM Plot |
| ESCA | rs7817775 | chr8:2446134 | G/C | 1.88E-9 | 179 | 13.33 | 14.57 | 2.93 | KM Plot |
| ESCA | rs7823836 | chr8:120876366 | G/A | 6.81E-6 | 184 | 12.87 | 18.57 | 3.6 | KM Plot |
| ESCA | rs7823910 | chr8:120876598 | C/T | 6.81E-6 | 184 | 12.87 | 18.57 | 3.6 | KM Plot |